count	source_label	source_id	relationship	target_label	target_id	entity_type	solr_id	publication_id	sentences
4	PHYE_ARATH	UNIPROT:P42498	activates		GO:0009845	Phenotype	29757cfa-352a-11e8-8636-001a4a160175	25532679	Heschel et al. (2007)demonstrated that temperature-responsive phytochrome-mediated germination pathways affect seed germination, with PhyA and PhyE promoting seed germination at warmer and colder temperatures, respectively, and PhyB promoting seed germination across a range of temperatures.
3	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010228	Phenotype	3dba3c5e-a751-11e6-b002-001a4ae51247	PMC5098793	phyE and phyB repress flowering in long days in a temperature-dependent manner To evaluate how each phytochrome pathway influences flowering and is influenced by temperature, we measured flowering time for all genotypes under long-day (LD) conditions, at temperatures of 18 to 24°C (Fig 2AandS4A Fig).|||Interestingly, we found that phyE repressed flowering, even to a greater extent than did phyB (Fig 2).|||However, phyE and phyB repressed flowering more efficiently as the temperature decreased, indicating that cross-talk exists between the phytochrome and temperature signaling pathways (Fig 2A).
2	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010228	Phenotype	9d66ad8c-1c2c-11f0-85c3-0050569a1f61	10.1016/j.ijbiomac.2023.128559	PHYB, PHYD, and PHYE are reported to have redundant roles [85] and PHYE was reported to control the repression of flowering at cooler temperatures [86] and PHYE deficiency led to early flowering [87].
2	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010228	Phenotype	41545514-45e7-11f0-afc2-0050569a791b	10.1016/j.envexpbot.2022.104797	PhyD and PhyE act in parallel with PhyB to involve in the red light-dependent inhibition of flowering (Valverde et al., 2004;Andrés and Coupland, 2012).
2	PHYE_ARATH	UNIPROT:P42498	activates		GO:0009845	Phenotype	4d0228d4-c467-11e5-9cbe-001a4ae51247	PMC3903992	"Among these photoreceptors, the phytochromes are the major photoreceptors responsible for promoting seed germination in
                      response to red, far-red, and blue light.Arabidopsispossesses five different phytochromes, three of which promote seed germination in response to different light conditions:
                      phytochrome A (phyA) mediates the very-low-fluence response and the far-red high-irradiance response, phyB mediates the low-fluence
                      response, and phyE mediates low-fluence response and far-red high-irradiance response to promote seed germination (Shinomura et al., 1994,1996;Hennig et al., 2002;Oh et al., 2004)."
2	PHYE_ARATH	UNIPROT:P42498	activates		UNIPROT:Q8WWA0	Protein	79b05c1a-c8e6-11e5-9cb8-001a4ae51247	PMC1913757	"The other phytochromes play more minor roles in these processes; PHYC and PHYD mediate LFR for inhibition of hypocotyl
                      elongation, while PHYD and PHYE mediate LFR for inhibition of petiole elongation (Aukerman et al., 1997;Devlin et al., 1998;Monte et al., 2003).|||PHYE has also been shown to mediate LFR and FR-HIR for seed germination
                      (Hennig et al., 2002)."
2	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010228	Phenotype	3efdd3da-cb8a-11e5-a7a8-001a4ae51246	PMC1539253	"It appears that phyB and phyE normally inhibit flowering in a redundant manner, but their effects can be suppressed by
                         an end-of-day far-red-light treatment.|||As described
                         previously, phyB, phyD, and phyE inhibit flowering in a redundant manner."
2		UNIPROT:Q24472	decreases	PHYE_ARATH	UNIPROT:P42498	Protein	8c18e2c6-1c71-11f0-a2ca-0050569a1f61	10.1016/j.crbiot.2024.100184	Additionally, the RBF light treatment dramatically up-regulated phyB expression while significantly down-regulating phyE expression, but had no discernible impact on the expressions of phyA andCRY1(Li et al., 2021).
2		UNIPROT:Q24472	increases	PHYE_ARATH	UNIPROT:P42498	Protein	8c18e2c6-1c71-11f0-a2ca-0050569a1f61	10.1016/j.crbiot.2024.100184	Additionally, the RBF light treatment dramatically up-regulated phyB expression while significantly down-regulating phyE expression, but had no discernible impact on the expressions of phyA andCRY1(Li et al., 2021).
2		UNIPROT:P14713	activates	PHYE_ARATH	UNIPROT:P42498	Protein	5a67d26a-ca5e-11e5-8050-001a4ae51246	PMC166893	This work reveals regulation ofATHB-2transcript abundance in response to EOD FR to be mediated redundantly by phyB and phyE.|||This increase was not affected by EOD FR treatment, suggesting regulation ofATHB-2transcript by EOD FR to be mediated by phyB and phyE in a functionally redundant manner.
1	PHYE_ARATH	UNIPROT:P42498	activates		UNIPROT:O15516	Protein	935999c6-cb28-11e5-8189-001a4ae51246	PMC102233	"We
                      demonstrate that phyD and phyE also mediate red light input to the clock."
1	PHYE_ARATH	UNIPROT:P42498	activates		UNIPROT:P14712	Protein	fa01aaf2-c46f-11e5-a92e-001a4ae51246	PMC2660632	"In addition to PHYA and PHYB, PHYE also promotes seed germination in response to low fluence response and far-red high
                      irradiance in imbibed seeds (Hennig et al., 2002)."
1	PHYE_ARATH	UNIPROT:P42498	activates		UNIPROT:P14712	Protein	e7ab25d2-cba9-11ee-9aaa-0050569a1f61	10.1016/j.envexpbot.2015.05.010	A model for the roles and interactions of phytochromes in seed germination was recently proposed: single and multiple-mutant approaches showed that PHYD and PHYE stimulated germination under low R:FR ratios in relation with PHYA (Arana et al., 2014).
1	PHYE_ARATH	UNIPROT:P42498	inhibits		UNIPROT:P14712	Protein	3dba3c5e-a751-11e6-b002-001a4ae51247	PMC5098793	phyB and phyA were the most important positive regulators of GA sensitivity (S1 Table,S3A and S3C Fig) and were both antagonized by phyC, phyD, and phyE (S3A Fig).
1	PHYE_ARATH	UNIPROT:P42498	inhibits		UNIPROT:P14713	Protein	3dba3c5e-a751-11e6-b002-001a4ae51247	PMC5098793	phyB and phyA were the most important positive regulators of GA sensitivity (S1 Table,S3A and S3C Fig) and were both antagonized by phyC, phyD, and phyE (S3A Fig).
1	PHYE_ARATH	UNIPROT:P42498	activates		UNIPROT:P14713	Protein	fa01aaf2-c46f-11e5-a92e-001a4ae51246	PMC2660632	"In addition to PHYA and PHYB, PHYE also promotes seed germination in response to low fluence response and far-red high
                      irradiance in imbibed seeds (Hennig et al., 2002)."
1	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0009641	Phenotype	350b238a-c930-11ee-9aaa-0050569a1f61	10.1016/j.plaphy.2023.01.007	Previous reports have found that phyE only slightly attenuates germination, shade avoidance and flowering in response to far-red light, fine tuning the major contributions of phyA-D (Franklin et al., 2003;Hennig et al., 2002;Devlin et al., 1998).
1	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010218	Phenotype	350b238a-c930-11ee-9aaa-0050569a1f61	10.1016/j.plaphy.2023.01.007	Previous reports have found that phyE only slightly attenuates germination, shade avoidance and flowering in response to far-red light, fine tuning the major contributions of phyA-D (Franklin et al., 2003;Hennig et al., 2002;Devlin et al., 1998).
1	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010228	Phenotype	350b238a-c930-11ee-9aaa-0050569a1f61	10.1016/j.plaphy.2023.01.007	Previous reports have found that phyE only slightly attenuates germination, shade avoidance and flowering in response to far-red light, fine tuning the major contributions of phyA-D (Franklin et al., 2003;Hennig et al., 2002;Devlin et al., 1998).
1	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010228	Phenotype	cdff4a74-c8eb-11e5-a4c6-001a4ae51246	PMC2577263	"The Pfr form of PHYB, PHYC, PHYD, and PHYE inhibits flowering, as indicated by the early flowering
                   of mutants that lack these photoreceptors (Goto et al., 1991;Reed et al., 1993;Aukerman et al., 1997;Devlin et al., 1998;Monte et al., 2003;Balasubramanian et al., 2006a)."
1	PHYE_ARATH	UNIPROT:P42498	inhibits		GO:0010228	Phenotype	868608bc-cc07-11e5-b0dd-001a4ae51247	PMC144080	That phyB, phyD, and phyE all function to inhibit flowering suggests redundancy within the phytochrome family.
1	PHYE_ARATH	UNIPROT:P42498	inhibits		MESH:D006851	Phenotype	2ec312b4-ea76-11ee-b346-0050569a791b	10.1016/j.foodres.2022.111626	Among photoreceptors, light strongly induced the expression levels ofPHOT1,PHOT2,PHYE, ZTLandFKF1, whilePHYAandUVR8were downregulated under both light conditions, andCRY1andPHYBwere only downregulated in CL.
1	PHYE_ARATH	UNIPROT:P42498	activates		GO:0009845	Phenotype	fa01aaf2-c46f-11e5-a92e-001a4ae51246	PMC2660632	"In addition to PHYA and PHYB, PHYE also promotes seed germination in response to low fluence response and far-red high
                      irradiance in imbibed seeds (Hennig et al., 2002)."
1		UNIPROT:P14714	inhibits	PHYE_ARATH	UNIPROT:P42498	Protein	3dba3c5e-a751-11e6-b002-001a4ae51247	PMC5098793	Similar to phyA, phyC antagonized the action of phyE, but contrary to phyA, also antagonized phyB at the lower temperatures (Fig 2AandS4A Fig).
1		UNIPROT:P14712	inhibits	PHYE_ARATH	UNIPROT:P42498	Protein	3dba3c5e-a751-11e6-b002-001a4ae51247	PMC5098793	Similar to phyA, phyC antagonized the action of phyE, but contrary to phyA, also antagonized phyB at the lower temperatures (Fig 2AandS4A Fig).